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Biophysical Assays: Overview

ICE Bioscience's biophysical assay platform offers a comprehensive suite of techniques that provide clients with both qualitative and quantitative insights into drug-target interactions, enabling data-driven decision-making at every stage of drug discovery. Our platform is designed to measure binding affinities, kinetics, thermodynamic properties, and protein stability, providing a deep understanding of molecular interactions and the mechanisms underlying compound efficacy. 

By delivering detailed, real-time data on binding events, including interaction strength and specificity, our biophysical assays empower researchers to identify and optimize high-potential drug candidates efficiently. Whether in the early screening of large libraries or in-depth characterization of lead compounds, our platform supports clients in making accurate, high-confidence evaluations, ultimately accelerating the path to therapeutic development.

Application

✅ Binding characterization for small molecules, PROTACs, and molecular glues. 

✅ Mechanism of action studies, including identification of allosteric binders. 

✅ Protein and biologic characterization: Stability, aggregation, formulation optimization, and post-translational modifications. 

✅ Epitope binning and molecular weight analysis for antibody and protein variants.

Protein Assay Table

TechnologyPrincipleAdvantagesThroughputData Output
Surface Plasmon Resonance (SPR)SPR detects changes in the refractive index near the sensor surface. When a ligand binds to a target immobilized on the sensor, this changes the refractive index, resulting in a measurable signal.Provides high-resolution, real-time kinetics data, enabling precise analysis of binding rates and affinity. It is ideal for lead optimization and understanding interaction dynamics.Medium to HighKa (association constant), Kd (dissociation constant), and binding rates (kon/koff), Rmax (maximum response).
Spectral ShiftBased on changes in light absorption or emission wavelength when a ligand binds to a target. These shifts are indicative of conformational changes or binding events.Label-free and sensitive to various ligand types, making it flexible for early binding studies. It's relatively straightforward for qualitative analysis.HighKd (dissociation constant), qualitative analysis
Temperature-Related Intensity Change (TRIC)TRIC measures temperature-dependent changes in fluorescent signal upon ligand binding. This technique is sensitive to binding-induced changes in molecular environment or size.Works in complex media, offering high sensitivity without needing target immobilization, which preserves native protein conformation.HighKd (dissociation constant), real-time analysis
Differential Scanning Fluorimetry-Thermal Shift Assay (DSF-TSA)DSF-TSA monitors protein unfolding by using extrinsic dyes (e.g., SYPRO Orange) that bind to hydrophobic regions exposed during denaturation, increasing fluorescence.Cost-effective, easy to set up with commonly available equipment (e.g., qPCR machines). Suitable for high-throughput screening of protein stability.HighMelting temperature (Tm), conformational stability (ΔTm), and insights into protein stability under varying conditions.
nano-Differential Scanning Fluorimetry-Thermal Shift Assay (nanoDSF-TSA)Uses intrinsic tryptophan fluorescence to detect protein unfolding or structural changes. It measures changes in fluorescence emission as the protein's structure changes with temperature.Measures protein stability without fluorescent dyes, providing a wide dynamic range with high precision. Higher sensitivity and small sample volume. Effective for studying thermal and chemical stability.Medium to HighMelting temperature (Tm), conformational stability(ΔTm),and insights into protein stability under varying conditions.
Isothermal Titration Calorimetry (ITC)ITC measures the heat released or absorbed during binding events, providing direct measurement of binding thermodynamics.Directly measures binding thermodynamics, offering detailed insights into enthalpy, entropy, and stoichiometry. This allows for comprehensive analysis of interaction mechanisms.LowEnthalpy (ΔH), entropy (ΔS), stoichiometry (n), and Kd binding affinity.
Intact Mass Spectrometry (Intact-MS)Measures the intact mass of proteins or protein complexes directly by ionizing the entire molecule and analyzing its mass-to-charge ratio (m/z) using a mass spectrometer.Provides highly accurate molecular weight measurements for intact proteins, enabling assessment of post-translational modifications (PTMs), glycosylation, and other variants. Does not require prior digestion or fragmentation.Low to MediumMolecular weight, post-translational modifications (e.g., glycosylation, phosphorylation), variant profiles, and stoichiometry.

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